aboutsummaryrefslogtreecommitdiff
path: root/gn3/computations/correlations.py
diff options
context:
space:
mode:
Diffstat (limited to 'gn3/computations/correlations.py')
-rw-r--r--gn3/computations/correlations.py15
1 files changed, 11 insertions, 4 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py
index 15ee1fa..d95ecee 100644
--- a/gn3/computations/correlations.py
+++ b/gn3/computations/correlations.py
@@ -132,9 +132,16 @@ def fast_compute_all_sample_correlation(this_trait,
for target_trait in target_dataset:
trait_name = target_trait.get("trait_id")
target_trait_data = target_trait["trait_sample_data"]
- processed_values.append((trait_name, corr_method,
- list(zip(*list(filter_shared_sample_keys(
- this_trait_samples, target_trait_data))))))
+
+ try:
+ this_vals, target_vals = list(zip(*list(filter_shared_sample_keys(
+ this_trait_samples, target_trait_data))))
+
+ processed_values.append(
+ (trait_name, corr_method, this_vals, target_vals))
+ except ValueError:
+ continue
+
with closing(multiprocessing.Pool()) as pool:
results = pool.starmap(compute_sample_r_correlation, processed_values)
@@ -173,7 +180,7 @@ def compute_all_sample_correlation(this_trait,
except ValueError:
# case where no matching strain names
- this_vals, target_vals = []
+ continue
sample_correlation = compute_sample_r_correlation(
trait_name=trait_name,