diff options
Diffstat (limited to 'gn3/commands.py')
| -rw-r--r-- | gn3/commands.py | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/gn3/commands.py b/gn3/commands.py index 4b0d62d..db32d1f 100644 --- a/gn3/commands.py +++ b/gn3/commands.py @@ -30,6 +30,13 @@ def compose_gemma_cmd(gemma_wrapper_cmd: str = "gemma-wrapper", cmd += " ".join([f"{arg}" for arg in gemma_args]) return cmd +def compose_rqtl_cmd(rqtl_wrapper_cmd: str, + rqtl_wrapper_kwargs: Dict) -> str: + """Compose a valid R/qtl command given the correct input""" + cmd = rqtl_wrapper_cmd + " " + " ".join( + [f"--{key} {val}" for key, val in rqtl_wrapper_kwargs.items()]) + + return cmd def queue_cmd(conn: Redis, job_queue: str, |