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Diffstat (limited to 'gn3/base/webqtlCaseData.py')
| -rw-r--r-- | gn3/base/webqtlCaseData.py | 84 |
1 files changed, 84 insertions, 0 deletions
diff --git a/gn3/base/webqtlCaseData.py b/gn3/base/webqtlCaseData.py new file mode 100644 index 0000000..8395af8 --- /dev/null +++ b/gn3/base/webqtlCaseData.py @@ -0,0 +1,84 @@ +# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) +# at rwilliams@uthsc.edu and xzhou15@uthsc.edu +# +# This module is used by GeneNetwork project (www.genenetwork.org) +# +# Created by GeneNetwork Core Team 2010/08/10 + + +# uncomment below + +# from utility.logger import getLogger +# logger = getLogger(__name__) + +# import utility.tools + +# utility.tools.show_settings() +# pylint: disable-all + +class webqtlCaseData: + """one case data in one trait""" + + def __init__(self, name, value=None, variance=None, num_cases=None, name2=None): + self.name = name + self.name2 = name2 # Other name (for traits like BXD65a) + self.value = value # Trait Value + self.variance = variance # Trait Variance + self.num_cases = num_cases # Number of individuals/cases + self.extra_attributes = None + self.this_id = None # Set a sane default (can't be just "id" cause that's a reserved word) + self.outlier = None # Not set to True/False until later + + def __repr__(self): + case_data_string = "<webqtlCaseData> " + if self.value is not None: + case_data_string += "value=%2.3f" % self.value + if self.variance is not None: + case_data_string += " variance=%2.3f" % self.variance + if self.num_cases: + case_data_string += " ndata=%s" % self.num_cases + if self.name: + case_data_string += " name=%s" % self.name + if self.name2: + case_data_string += " name2=%s" % self.name2 + return case_data_string + + @property + def class_outlier(self): + """Template helper""" + if self.outlier: + return "outlier" + return "" + + @property + def display_value(self): + if self.value is not None: + return "%2.3f" % self.value + return "x" + + @property + def display_variance(self): + if self.variance is not None: + return "%2.3f" % self.variance + return "x" + + @property + def display_num_cases(self): + if self.num_cases is not None: + return "%s" % self.num_cases + return "x"
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