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-rw-r--r--gn3/auth/authorisation/resources/views.py34
1 files changed, 27 insertions, 7 deletions
diff --git a/gn3/auth/authorisation/resources/views.py b/gn3/auth/authorisation/resources/views.py
index 44e2c4e..e373182 100644
--- a/gn3/auth/authorisation/resources/views.py
+++ b/gn3/auth/authorisation/resources/views.py
@@ -7,13 +7,13 @@ from flask import request, jsonify, Response, Blueprint, current_app as app
from gn3 import db_utils as gn3dbutils
from gn3.auth.db_utils import with_db_connection
-from .data import retrieve_ungrouped_data
+from .data import link_data_to_group, retrieve_ungrouped_data
from .models import (
resource_by_id, resource_categories, resource_category_by_id,
create_resource as _create_resource)
-from ..errors import AuthorisationError
-from ..groups.models import user_group, DUMMY_GROUP
+from ..errors import InvalidData, AuthorisationError
+from ..groups.models import user_group, DUMMY_GROUP, group_by_id
from ... import db
from ...dictify import dictify
@@ -115,7 +115,27 @@ def ungrouped_data(dataset_type: str) -> Response:
if dataset_type not in ("all", "mrna", "genotype", "phenotype"):
raise AuthorisationError(f"Invalid dataset type {dataset_type}")
- with gn3dbutils.database_connection() as gn3conn:
- return jsonify(with_db_connection(partial(
- retrieve_ungrouped_data, gn3conn=gn3conn,
- dataset_type=dataset_type)))
+ with require_oauth.acquire("profile group resource") as _the_token:
+ with gn3dbutils.database_connection() as gn3conn:
+ return jsonify(with_db_connection(partial(
+ retrieve_ungrouped_data, gn3conn=gn3conn,
+ dataset_type=dataset_type)))
+
+@resources.route("/data/link", methods=["POST"])
+@require_oauth("profile group resource")
+def link_data() -> Response:
+ """Link selected data to specified group."""
+ with require_oauth.acquire("profile group resource") as _the_token:
+ form = request.form
+ group_id = uuid.UUID(form["group_id"])
+ dataset_id = form["dataset_id"]
+ dataset_type = form.get("dataset_type")
+ if dataset_type not in ("mrna", "genotype", "phenotype"):
+ raise InvalidData("Unexpected dataset type requested!")
+ def __link__(conn: db.DbConnection):
+ group = group_by_id(conn, group_id)
+ with gn3dbutils.database_connection() as gn3conn:
+ return link_data_to_group(
+ conn, gn3conn, dataset_type, dataset_id, group)
+
+ return jsonify(with_db_connection(__link__))