diff options
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/rqtl.py | 6 |
1 files changed, 4 insertions, 2 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index 7246ba8..39f45a3 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -64,9 +64,11 @@ run the rqtl_wrapper script and return the results as JSON run_id = request.args.get("id", str(uuid.uuid4())) if not os.path.isfile(os.path.join(current_app.config.get("TMPDIR"), "gn3", rqtl_cmd.get('output_file'))): - stream_ouput_file = os.path.join(current_app.config.get("TMPDIR"), + pass + stream_ouput_file = os.path.join(current_app.config.get("TMPDIR"), f"{run_id}.txt") - run_process(rqtl_cmd.get("rqtl_cmd"), stream_ouput_file, run_id) + + results = run_process(rqtl_cmd.get("rqtl_cmd"), stream_ouput_file, run_id) if "pairscan" in rqtl_bool_kwargs: rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile) |