diff options
Diffstat (limited to 'gn3/api/rqtl.py')
| -rw-r--r-- | gn3/api/rqtl.py | 5 |
1 files changed, 2 insertions, 3 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index ae0110d..bfb191e 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -8,7 +8,7 @@ from flask import request from gn3.computations.rqtl import generate_rqtl_cmd, process_rqtl_mapping, \ process_rqtl_pairscan, process_perm_output -from gn3.computations.gemma import do_paths_exist +from gn3.computations.gemma import assert_paths_exist rqtl = Blueprint("rqtl", __name__) @@ -21,8 +21,7 @@ run the rqtl_wrapper script and return the results as JSON genofile = request.form['geno_file'] phenofile = request.form['pheno_file'] - if not do_paths_exist([genofile, phenofile]): - raise FileNotFoundError + assert_paths_exist([genofile, phenofile]) # Split kwargs by those with values and boolean ones that just convert to True/False kwargs = ["covarstruct", "model", "method", "nperm", "scale", "control"] |