diff options
| -rw-r--r-- | scripts/rqtl2_wrapper.R | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/rqtl2_wrapper.R b/scripts/rqtl2_wrapper.R index 7cad7d5..52a37be 100644 --- a/scripts/rqtl2_wrapper.R +++ b/scripts/rqtl2_wrapper.R @@ -434,7 +434,7 @@ get_lod_significance <- function(perm, threshold = c(0.01, 0.05)){ summary(perm, alpha = threshold) } -lod_significance <- get_lod_significance(perm, threshold =c(0.33, 0.05, 0.01)) +lod_significance <- get_lod_significance(perm, threshold =c(0.63, 0.05, 0.01)) permutation_results_file = file.path(opt$directory, "permutation.csv") significance_results_file = file.path(opt$directory, "significance.csv") write.csv(lod_significance, significance_results_file) |