diff options
| -rw-r--r-- | gn3/api/metadata.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index bbf6a74..a374f03 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -1327,3 +1327,49 @@ CONSTRUCT { }) except (RemoteDisconnected, URLError): return jsonify({}) + +@metadata.route("/species/<name>", methods=["GET"]) +def fetch_species(name): + """Fetch a Single species information""" + try: + sparql = SPARQLWrapper(current_app.config.get("SPARQL_ENDPOINT")) + sparql.setQuery(Template(""" +$prefix + +CONSTRUCT { + ?species ?predicate ?object . +} WHERE { + ?species ^skos:member gnc:Species ; + gnt:shortName "$name" ; + ?predicate ?object . + VALUES ?predicate { + rdfs:label skos:prefLabel + skos:altLabel gnt:shortName + gnt:family skos:notation + } + +} +""").substitute(prefix=RDF_PREFIXES, name=name)) + results = sparql.queryAndConvert() + results = json.loads( + results.serialize(format="json-ld") + ) + return jsonld.compact(results, { + "@context": { + "data": "@graph", + "type": "@type", + "id": "@id", + "skos": "http://www.w3.org/2004/02/skos/core#", + "gnt": "http://genenetwork.org/term/", + "rdfs": "http://www.w3.org/2000/01/rdf-schema#", + "name": "rdfs:label", + "family": "gnt:family", + "shortName": "gnt:shortName", + "alternateName": "skos:altLabel", + "taxonomicId": "skos:notation", + "fullName": "skos:prefLabel", + }, + }) + except (RemoteDisconnected, URLError): + return jsonify({}) + |