diff options
| -rwxr-xr-x | scripts/index-genenetwork | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/scripts/index-genenetwork b/scripts/index-genenetwork index 8769689..52a48df 100755 --- a/scripts/index-genenetwork +++ b/scripts/index-genenetwork @@ -198,6 +198,36 @@ _:node rdf:type gnc:GNWikiEntry ; return cache +def hash_generif_graph(): + sparql = SPARQLWrapper( + "http://localhost:8982/sparql" + ) + sparql.setReturnFormat(JSON) + query = """ +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX gnt: <http://genenetwork.org/term/> +PREFIX gnc: <http://genenetwork.org/category/> + +SELECT SHA256(GROUP_CONCAT(?entries ; separator=\"\\n\")) AS ?hash WHERE { + {{ + SELECT ?type CONCAT(?symbolName, ",", ?speciesName, \"\\n\",GROUP_CONCAT(?comment ; separator=\"\\n\")) AS ?entries WHERE { + ?symbol rdfs:comment _:node ; + rdfs:label ?symbolName . +_:node rdf:type gnc:GNWikiEntry ; + rdf:type ?type ; + gnt:belongsToSpecies ?species ; + rdfs:comment ?comment . +?species gnt:shortName ?speciesName . +} GROUP BY ?speciesName ?symbolName ?type + }} + } GROUP BY ?type +""" + sparql.setQuery(query) + results = sparql.queryAndConvert()["results"]["bindings"] + return results[0]["hash"]["value"] + + # pylint: disable=invalid-name def write_document(db: xapian.WritableDatabase, identifier: str, doctype: str, doc: xapian.Document) -> None: |