diff options
| -rw-r--r-- | gn3/db/datasets.py | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/gn3/db/datasets.py b/gn3/db/datasets.py index 043be4c..171a70e 100644 --- a/gn3/db/datasets.py +++ b/gn3/db/datasets.py @@ -1,7 +1,6 @@ """ This module contains functions relating to specific trait dataset manipulation """ -import os from typing import Any from pathlib import Path @@ -16,11 +15,13 @@ def retrieve_sample_list(group: str): """ samplelist = [] - genofile_path = ( - f'{app.config.get("GENENETWORK_FILES", "/home/gn2/production/genotype_files/")}' - f'/genotype/{group}.geno' + genofile_path = Path( + app.config.get( + "GENENETWORK_FILES", + "/home/gn2/production/genotype_files/" + ), f'genotype/{group}.geno' ) - if os.path.isfile(genofile_path): + if genofile_path.is_file(): with open(genofile_path, encoding="utf-8") as genofile: line = "" for line in genofile: |