diff options
| -rw-r--r-- | gn3/api/rqtl.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index c2d988a..e029d8d 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -1,5 +1,6 @@ """Endpoints for running the rqtl cmd""" import os +from pathlib import Path from flask import Blueprint from flask import current_app @@ -42,7 +43,9 @@ run the rqtl_wrapper script and return the results as JSON os.mkdir(outdir) rqtl_cmd = generate_rqtl_cmd( - rqtl_wrapper_cmd='scripts/rqtl_wrapper.R', + rqtl_wrapper_cmd=str( + Path(__file__).absolute().parent.parent.parent.joinpath( + 'scripts/rqtl_wrapper.R')), rqtl_wrapper_kwargs=rqtl_kwargs, rqtl_wrapper_bool_kwargs=rqtl_bool_kwargs ) |