diff options
| -rw-r--r-- | gn3/computations/rqtl2.py | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py index f6b4086..703d5fd 100644 --- a/gn3/computations/rqtl2.py +++ b/gn3/computations/rqtl2.py @@ -207,3 +207,25 @@ def process_scan_results(qtl_file_path: str, }) return results + +def process_qtl2_results(results: Dict[str, str]) -> Dict[str, any]: + """Function provides abstraction for processing all QTL2 mapping results. + + Args: + results (Dict[str, str]): A dictionary containing file paths and + other related parameters. + + Returns: + Dict[str, any]: A dictionary containing both QTL + and permutation results along with input data. + """ + qtl_results = process_scan_results(results["scan_file"], results["gmap_file"]) + permutation_results = process_permutation(results) + + return { + **results, # Include original input data + "qtl_results": qtl_results, + "permutation_results": permutation_results + } + + |