diff options
| -rw-r--r-- | gn3/computations/rqtl.py | 5 |
1 files changed, 4 insertions, 1 deletions
diff --git a/gn3/computations/rqtl.py b/gn3/computations/rqtl.py index eaf5df5..78c3a8a 100644 --- a/gn3/computations/rqtl.py +++ b/gn3/computations/rqtl.py @@ -110,7 +110,7 @@ def pairscan_for_figure(file_name: str) -> Dict: # Open the file with the actual results, written as a list of lists outdir = os.path.join(get_tmpdir(),"gn3") - with open( os.path.join(outdir,file_name),"r",encoding="utf-8") as the_file: + with open(os.path.join(outdir, file_name), "r",encoding="utf-8") as the_file: lod_results = [] for i, line in enumerate(the_file): if i == 0: # Skip first line @@ -133,14 +133,17 @@ def pairscan_for_figure(file_name: str) -> Dict: ) as the_file: chr_list = [] # type: List pos_list = [] # type: List + markers = [] for i, line in enumerate(the_file): if i == 0: # Skip first line continue line_items = [item.rstrip("\n") for item in line.split(",")] chr_list.append(line_items[1][1:-1]) pos_list.append(line_items[2]) + markers.append(line_items[0]) figure_data["chr"] = chr_list figure_data["pos"] = pos_list + figure_data["name"] = markers return figure_data |