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| -rw-r--r-- | README.md | 4 |
1 files changed, 4 insertions, 0 deletions
@@ -124,6 +124,10 @@ These configurations should be set in an external config file, pointed to with t - SPARQL_ENDPOINT (ex: "http://localhost:9082/sparql") - XAPIAN_DB_PATH (ex: "/export/data/genenetwork/xapian") - TMPDIR +- SPARQL_USER +- SPARQL_ENDPOINT (ex: "http://localhost:9082/sparql-auth/") +- SPARQL_PASSWORD +- SPARQL_AUTH_URI TMPDIR also needs to be set correctly for the R script(s) because they pass results on as files on the local system (previously there was an issue with it being set to /tmp instead of ~/genenetwork3/tmp). Note that the Guix build system should take care of the paths. |