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| author | Pjotr Prins | 2024-04-03 11:09:20 +0200 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-09-12 07:40:03 -0500 |
| commit | fd25b6bf205e4642cf5f6ba5ed0e0cad73efc0b6 (patch) | |
| tree | 63511ead7559cfcc360c9ea67229fd3931d3d92e /tests/unit | |
| parent | d623d931046495239c7ce9ec3024e028b2f26fde (diff) | |
| download | genenetwork3-fd25b6bf205e4642cf5f6ba5ed0e0cad73efc0b6.tar.gz | |
rqtl_wrapper: minor fixes
Diffstat (limited to 'tests/unit')
| -rw-r--r-- | tests/unit/test_commands.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tests/unit/test_commands.py b/tests/unit/test_commands.py index 4dd8735..de0918a 100644 --- a/tests/unit/test_commands.py +++ b/tests/unit/test_commands.py @@ -61,7 +61,7 @@ class TestCommands(unittest.TestCase): def test_compose_rqtl_cmd(self): """Test that the R/qtl cmd is composed correctly""" self.assertEqual( - compose_rqtl_cmd(rqtl_wrapper_cmd="rqtl-wrapper", + compose_rqtl_cmd(rqtl_wrapper_cmd="scripts/rqtl-wrapper", rqtl_wrapper_kwargs={ "g": "the_genofile", "p": "the_phenofile", @@ -74,7 +74,7 @@ class TestCommands(unittest.TestCase): rqtl_wrapper_bool_kwargs=[ "addcovar" ]), - ("Rscript rqtl-wrapper " + ("Rscript scripts/rqtl-wrapper " "--g the_genofile --p the_phenofile " "--model np --method ehk " "--nperm 2000 --scale Mb " |