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authorPjotr Prins2024-04-03 11:09:20 +0200
committerFrederick Muriuki Muriithi2024-09-12 07:40:03 -0500
commitfd25b6bf205e4642cf5f6ba5ed0e0cad73efc0b6 (patch)
tree63511ead7559cfcc360c9ea67229fd3931d3d92e /tests/unit
parentd623d931046495239c7ce9ec3024e028b2f26fde (diff)
downloadgenenetwork3-fd25b6bf205e4642cf5f6ba5ed0e0cad73efc0b6.tar.gz
rqtl_wrapper: minor fixes
Diffstat (limited to 'tests/unit')
-rw-r--r--tests/unit/test_commands.py4
1 files changed, 2 insertions, 2 deletions
diff --git a/tests/unit/test_commands.py b/tests/unit/test_commands.py
index 4dd8735..de0918a 100644
--- a/tests/unit/test_commands.py
+++ b/tests/unit/test_commands.py
@@ -61,7 +61,7 @@ class TestCommands(unittest.TestCase):
def test_compose_rqtl_cmd(self):
"""Test that the R/qtl cmd is composed correctly"""
self.assertEqual(
- compose_rqtl_cmd(rqtl_wrapper_cmd="rqtl-wrapper",
+ compose_rqtl_cmd(rqtl_wrapper_cmd="scripts/rqtl-wrapper",
rqtl_wrapper_kwargs={
"g": "the_genofile",
"p": "the_phenofile",
@@ -74,7 +74,7 @@ class TestCommands(unittest.TestCase):
rqtl_wrapper_bool_kwargs=[
"addcovar"
]),
- ("Rscript rqtl-wrapper "
+ ("Rscript scripts/rqtl-wrapper "
"--g the_genofile --p the_phenofile "
"--model np --method ehk "
"--nperm 2000 --scale Mb "