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authorAlexander Kabui2021-11-29 00:27:19 +0300
committerBonfaceKilz2021-12-10 09:58:29 +0300
commitbc1b310503d63555ffe9d2da0a881f11b666fa3b (patch)
tree95c692ac6f7f0c67ae80233351cf4a523c5c76f0 /tests/unit
parentd253a9bc5e4831da03df45c7b0b73ed4456853b9 (diff)
downloadgenenetwork3-bc1b310503d63555ffe9d2da0a881f11b666fa3b.tar.gz
refactor sample r unittests
Diffstat (limited to 'tests/unit')
-rw-r--r--tests/unit/computations/test_correlation.py27
1 files changed, 7 insertions, 20 deletions
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py
index 8b50f0e..0de347d 100644
--- a/tests/unit/computations/test_correlation.py
+++ b/tests/unit/computations/test_correlation.py
@@ -113,36 +113,23 @@ class TestCorrelation(TestCase):
"""Test for doing sample correlation gets the cor\
and p value and rho value using pearson correlation
"""
- primary_values = [2.3, 4.1, 5]
- target_values = [3.4, 6.2, 4.1]
+ primary_values = [2.3, 4.1, 5, 4.2, None, None, 4, 1.2, 1.1]
+ target_values = [3.4, 6.2, 4, 1.1, 1.2, None, 8, 1.1, 2.1]
- norm_vals.return_value = ([2.3, 4.1, 5, 4.2, 4, 1.2],
- [3.4, 6.2, 4, 1.1, 8, 1.1], 6)
- compute_corr.side_effect = [(0.7, 0.3), (-1.0, 0.9), (1, 0.21)]
- pearson_results = compute_sample_r_correlation(trait_name="1412_at",
- corr_method="pearson",
- trait_vals=primary_values,
- target_samples_vals=target_values)
+ norm_vals.return_value = iter(
+ [(2.3, 3.4), (4.1, 6.2), (5, 4), (4.2, 1.1), (4, 8), (1.2, 1.1), (1.1, 2.1)])
- spearman_results = compute_sample_r_correlation(trait_name="1412_at",
- corr_method="spearman",
- trait_vals=primary_values,
- target_samples_vals=target_values)
+
+ compute_corr.return_value = (0.8, 0.21)
bicor_results = compute_sample_r_correlation(trait_name="1412_at",
corr_method="bicor",
trait_vals=primary_values,
target_samples_vals=target_values)
- self.assertEqual(bicor_results, ("1412_at", 1, 0.21, 6))
- self.assertEqual(pearson_results, ("1412_at", 0.7, 0.3, 6))
- self.assertEqual(spearman_results, ("1412_at", -1.0, 0.9, 6))
- self.assertIsInstance(
- pearson_results, tuple, "message")
- self.assertIsInstance(
- spearman_results, tuple, "message")
+ self.assertEqual(bicor_results, ("1412_at", 0.8, 0.21, 7))
def test_filter_shared_sample_keys(self):
"""Function to tests shared key between two dicts"""