aboutsummaryrefslogtreecommitdiff
path: root/tests/unit
diff options
context:
space:
mode:
authorAlexander Kabui2021-09-16 22:56:21 +0300
committerAlexander Kabui2021-09-16 22:56:21 +0300
commitab8b53a50a601cb95dc0b54279246431c791dd70 (patch)
treede51c368a2223f572a40ae8a560f9fa9785d42fd /tests/unit
parente8f3a7131e8f1fcaf803dedab3177374f46e3709 (diff)
downloadgenenetwork3-ab8b53a50a601cb95dc0b54279246431c791dd70.tar.gz
pylint fixes
Diffstat (limited to 'tests/unit')
-rw-r--r--tests/unit/computations/test_wgcna.py31
1 files changed, 21 insertions, 10 deletions
diff --git a/tests/unit/computations/test_wgcna.py b/tests/unit/computations/test_wgcna.py
index 8a68985..9a88515 100644
--- a/tests/unit/computations/test_wgcna.py
+++ b/tests/unit/computations/test_wgcna.py
@@ -9,20 +9,28 @@ class TestWgcna(TestCase):
def test_compose_wgcna_cmd(self):
"""test for composing wgcna cmd"""
- wgcna_cmd = compose_wgcna_cmd("/wgcna.r", "/tmp/wgcna.json")
- self.assertEqual(wgcna_cmd, f"Rscript /wgcna.r /tmp/wgcna.json")
+ wgcna_cmd = compose_wgcna_cmd(
+ "/wgcna.r", "/tmp/wgcna.json")
+ self.assertEqual(
+ wgcna_cmd, "Rscript /wgcna.r /tmp/wgcna.json")
- def test_create_json_data(self):
+ def test_create_json_file(self):
"""test for writing the data to a csv file"""
# # All the traits we have data for (should not contain duplicates)
# All the strains we have data for (contains duplicates)
- trait_sample_data = {"1425642_at": {"129S1/SvImJ": 7.142, "A/J": 7.31, "AKR/J": 7.49,
- "B6D2F1": 6.899, "BALB/cByJ": 7.172, "BALB/cJ": 7.396},
- "1457784_at": {"129S1/SvImJ": 7.071, "A/J": 7.05, "AKR/J": 7.313,
- "B6D2F1": 6.999, "BALB/cByJ": 7.293, "BALB/cJ": 7.117},
- "1444351_at": {"129S1/SvImJ": 7.221, "A/J": 7.246, "AKR/J": 7.754,
- "B6D2F1": 6.866, "BALB/cByJ": 6.752, "BALB/cJ": 7.269}
+ trait_sample_data = {"1425642_at": {"129S1/SvImJ": 7.142,
+ "A/J": 7.31, "AKR/J": 7.49,
+ "B6D2F1": 6.899, "BALB/cByJ": 7.172,
+ "BALB/cJ": 7.396},
+ "1457784_at": {"129S1/SvImJ": 7.071, "A/J": 7.05,
+ "AKR/J": 7.313,
+ "B6D2F1": 6.999, "BALB/cByJ": 7.293,
+ "BALB/cJ": 7.117},
+ "1444351_at": {"129S1/SvImJ": 7.221, "A/J": 7.246,
+ "AKR/J": 7.754,
+ "B6D2F1": 6.866, "BALB/cByJ": 6.752,
+ "BALB/cJ": 7.269}
}
@@ -32,4 +40,7 @@ class TestWgcna(TestCase):
"minModuleSize": 30
}
- _results = dump_wgcna_data(expected_input)
+ results = dump_wgcna_data(
+ expected_input)
+
+ self.assertEqual(results, {})