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| author | Muriithi Frederick Muriuki | 2021-09-01 11:08:38 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-09-01 11:08:38 +0300 |
| commit | 3ded952f40f486d9aa69746eac2afe7f67fef790 (patch) | |
| tree | 27847b2c8081a3254b6c28a8c6c7b691c1478947 /tests/unit | |
| parent | abfc0410a2385d8c3d6ee1915fc99b708e1d0dbc (diff) | |
| download | genenetwork3-3ded952f40f486d9aa69746eac2afe7f67fef790.tar.gz | |
Fix linting and typing issues
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
Diffstat (limited to 'tests/unit')
| -rw-r--r-- | tests/unit/db/test_genotypes.py | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/tests/unit/db/test_genotypes.py b/tests/unit/db/test_genotypes.py index a05ce48..c125224 100644 --- a/tests/unit/db/test_genotypes.py +++ b/tests/unit/db/test_genotypes.py @@ -18,9 +18,9 @@ class TestGenotypes(TestCase): "@type:test_type", "@mat:test_mat \t", "@pat:test_pat ", "@het: test_het ", "@unk: test_unk", "@other: test_other", "@brrr: test_brrr "]), - (("group", "test_group"), ("filler", "test_filler"), - ("type", "test_type"), ("mat", "test_mat"), ("pat", "test_pat"), - ("het", "test_het"), ("unk", "test_unk"))) + (("group", "test_group"), ("filler", "test_filler"), + ("type", "test_type"), ("mat", "test_mat"), ("pat", "test_pat"), + ("het", "test_het"), ("unk", "test_unk"))) def test_parse_genotype_header(self): """Test that the genotype header is parsed correctly.""" @@ -71,7 +71,7 @@ class TestGenotypes(TestCase): (("chr", "1"), ("name", "rs31443144"), ("cM", 2.0), ("Mb", 3.0), ("genotype", (-1, -1, 1, 0, 1, -1, "U", 1, -1, -1)))]]: - with self.subTest(line = line): + with self.subTest(line=line): self.assertEqual( parse_genotype_marker(line, geno_obj, parlist), expected) @@ -110,7 +110,7 @@ class TestGenotypes(TestCase): ("loci", ({"chr": "1", "name": "rs31443144", "cM": 2.0, "Mb": None, "genotype": (-1, 1, 1, 0, 1, -1, "U", 1, -1, -1)},))),)]]: - with self.subTest(markers = markers): + with self.subTest(markers=markers): self.assertEqual( build_genotype_chromosomes(geno_obj, markers), expected) |