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| author | Frederick Muriuki Muriithi | 2022-02-14 06:56:32 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-02-17 06:37:30 +0300 |
| commit | 74044f3c7985308b4996da3a52f91c5c20a19194 (patch) | |
| tree | d86714b859b31cbbd1755522f8abd8eed16e321b /tests/unit/computations/test_wgcna.py | |
| parent | 67f517aa0f44f55dc691ffd791bf22ef7af0b02c (diff) | |
| download | genenetwork3-74044f3c7985308b4996da3a52f91c5c20a19194.tar.gz | |
Use pytest's "mark" feature to categorise tests
Use pytest's `mark` feature to explicitly categorise the tests and run them
per category
Diffstat (limited to 'tests/unit/computations/test_wgcna.py')
| -rw-r--r-- | tests/unit/computations/test_wgcna.py | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/tests/unit/computations/test_wgcna.py b/tests/unit/computations/test_wgcna.py index 5f23a86..3130374 100644 --- a/tests/unit/computations/test_wgcna.py +++ b/tests/unit/computations/test_wgcna.py @@ -2,6 +2,8 @@ from unittest import TestCase from unittest import mock +import pytest + from gn3.computations.wgcna import dump_wgcna_data from gn3.computations.wgcna import compose_wgcna_cmd from gn3.computations.wgcna import call_wgcna_script @@ -10,6 +12,7 @@ from gn3.computations.wgcna import call_wgcna_script class TestWgcna(TestCase): """test class for wgcna""" + @pytest.mark.unit_test @mock.patch("gn3.computations.wgcna.process_image") @mock.patch("gn3.computations.wgcna.run_cmd") @mock.patch("gn3.computations.wgcna.compose_wgcna_cmd") @@ -95,6 +98,7 @@ class TestWgcna(TestCase): self.assertEqual(results, expected_output) + @pytest.mark.unit_test @mock.patch("gn3.computations.wgcna.run_cmd") @mock.patch("gn3.computations.wgcna.compose_wgcna_cmd") @mock.patch("gn3.computations.wgcna.dump_wgcna_data") @@ -117,6 +121,7 @@ class TestWgcna(TestCase): self.assertEqual(call_wgcna_script( "input_file.R", ""), expected_error) + @pytest.mark.unit_test def test_compose_wgcna_cmd(self): """test for composing wgcna cmd""" wgcna_cmd = compose_wgcna_cmd( @@ -124,6 +129,7 @@ class TestWgcna(TestCase): self.assertEqual( wgcna_cmd, "Rscript ./scripts/wgcna.r /tmp/wgcna.json") + @pytest.mark.unit_test @mock.patch("gn3.computations.wgcna.TMPDIR", "/tmp") @mock.patch("gn3.computations.wgcna.uuid.uuid4") def test_create_json_file(self, file_name_generator): |