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| author | Pjotr Prins | 2024-04-01 08:45:42 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-09-12 07:40:02 -0500 |
| commit | 439b430d69bece15a503ab5ea5ea2435e1e5f6fb (patch) | |
| tree | 2e8c8e8fe549a8d5d109d58e7e3721d98f682dcb /tests/unit/computations/test_rqtl.py | |
| parent | a9e73d2aa87d45e65cbaf9598ddcff278ba80ae5 (diff) | |
| download | genenetwork3-439b430d69bece15a503ab5ea5ea2435e1e5f6fb.tar.gz | |
Fix Rqtl test
Diffstat (limited to 'tests/unit/computations/test_rqtl.py')
| -rw-r--r-- | tests/unit/computations/test_rqtl.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/tests/unit/computations/test_rqtl.py b/tests/unit/computations/test_rqtl.py index 51df281..cd5984c 100644 --- a/tests/unit/computations/test_rqtl.py +++ b/tests/unit/computations/test_rqtl.py @@ -16,7 +16,7 @@ class TestRqtl(unittest.TestCase): mock_generate_hash_string.return_value = "my-hash2" self.assertEqual( - generate_rqtl_cmd(rqtl_wrapper_cmd="rqtl-wrapper", + generate_rqtl_cmd(rqtl_wrapper_cmd="scripts/rqtl_wrapper.R", rqtl_wrapper_kwargs={ "g": "genofile", "p": "phenofile", @@ -33,7 +33,7 @@ class TestRqtl(unittest.TestCase): "output_file": "my-hash1my-hash2my-hash2-output.csv", "rqtl_cmd": ( - "Rscript rqtl-wrapper " + "Rscript scripts/rqtl_wrapper.R " "--g genofile --p phenofile " "--model normal --method hk " "--nperm 1000 --scale Mb " |