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authorFrederick Muriuki Muriithi2021-09-15 06:01:44 +0300
committerFrederick Muriuki Muriithi2021-09-15 06:01:44 +0300
commitf17b489c8eb94050b81b1a59fb43954d036f7c38 (patch)
treeff4414fea0ff3b1a663e553f846cfa7abe5b0320 /tests/unit/computations/test_qtlreaper.py
parented2e4c0f9d68cfb720da95eba559d69359f7b5fc (diff)
downloadgenenetwork3-f17b489c8eb94050b81b1a59fb43954d036f7c38.tar.gz
Fix format of arguments and expected values
* tests/unit/computations/test_heatmap.py: ordering is not longer provided as a list of tuples; the ordering values are just a list of numbers now. This commit updates the test to take this into consideration. * tests/unit/computations/test_qtlreaper.py: the 'Chr' value if numeric, is represented by an actual number, not a string. This commit updates the code to take this into consideration.
Diffstat (limited to 'tests/unit/computations/test_qtlreaper.py')
-rw-r--r--tests/unit/computations/test_qtlreaper.py20
1 files changed, 10 insertions, 10 deletions
diff --git a/tests/unit/computations/test_qtlreaper.py b/tests/unit/computations/test_qtlreaper.py
index 495ed97..1d67827 100644
--- a/tests/unit/computations/test_qtlreaper.py
+++ b/tests/unit/computations/test_qtlreaper.py
@@ -15,52 +15,52 @@ class TestQTLReaper(TestCase):
"tests/unit/computations/data/qtlreaper/main_output_sample.txt"),
[
{
- "ID": "T1", "Locus": "rs31443144", "Chr": "1", "cM": 1.500,
+ "ID": "T1", "Locus": "rs31443144", "Chr": 1, "cM": 1.500,
"Mb": 3.010, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs6269442", "Chr": "1", "cM": 1.500,
+ "ID": "T1", "Locus": "rs6269442", "Chr": 1, "cM": 1.500,
"Mb": 3.492, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs32285189", "Chr": "1", "cM": 1.630,
+ "ID": "T1", "Locus": "rs32285189", "Chr": 1, "cM": 1.630,
"Mb": 3.511, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs258367496", "Chr": "1", "cM": 1.630,
+ "ID": "T1", "Locus": "rs258367496", "Chr": 1, "cM": 1.630,
"Mb": 3.660, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs32430919", "Chr": "1", "cM": 1.750,
+ "ID": "T1", "Locus": "rs32430919", "Chr": 1, "cM": 1.750,
"Mb": 3.777, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs36251697", "Chr": "1", "cM": 1.880,
+ "ID": "T1", "Locus": "rs36251697", "Chr": 1, "cM": 1.880,
"Mb": 3.812, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs30658298", "Chr": "1", "cM": 2.010,
+ "ID": "T1", "Locus": "rs30658298", "Chr": 1, "cM": 2.010,
"Mb": 4.431, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs51852623", "Chr": "1", "cM": 2.010,
+ "ID": "T1", "Locus": "rs51852623", "Chr": 1, "cM": 2.010,
"Mb": 4.447, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs31879829", "Chr": "1", "cM": 2.140,
+ "ID": "T1", "Locus": "rs31879829", "Chr": 1, "cM": 2.140,
"Mb": 4.519, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
},
{
- "ID": "T1", "Locus": "rs36742481", "Chr": "1", "cM": 2.140,
+ "ID": "T1", "Locus": "rs36742481", "Chr": 1, "cM": 2.140,
"Mb": 4.776, "LRS": 0.500, "Additive": -0.074,
"pValue": 1.000
}