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| author | Muriithi Frederick Muriuki | 2021-07-26 15:39:42 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-07-26 15:39:42 +0300 |
| commit | 4c8c13814a22fe6b40081ecfa1f957bc5bf99930 (patch) | |
| tree | 685b7b0e4ca2b86e13f43235320e80d273a092c8 /tests/unit/computations/test_correlation.py | |
| parent | 278f1a18b59b1cadd04c50a9af35b5aece4d722d (diff) | |
| download | genenetwork3-4c8c13814a22fe6b40081ecfa1f957bc5bf99930.tar.gz | |
Fix issues caught by pylint
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Fix a myriad of issues caught by pylint to ensure the code passes all tests.
Diffstat (limited to 'tests/unit/computations/test_correlation.py')
| -rw-r--r-- | tests/unit/computations/test_correlation.py | 32 |
1 files changed, 17 insertions, 15 deletions
diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py index 6153c8a..9450094 100644 --- a/tests/unit/computations/test_correlation.py +++ b/tests/unit/computations/test_correlation.py @@ -467,26 +467,28 @@ class TestCorrelation(TestCase): self.assertEqual(results, [expected_results]) def test_compute_correlation(self): - for dbdata,userdata,expected in [ - [[None,None,None,None,None,None,None,None,None,None], - [None,None,None,None,None,None,None,None,None,None], + """Test that the new correlation function works the same as the original + from genenetwork1.""" + for dbdata, userdata, expected in [ + [[None, None, None, None, None, None, None, None, None, None], + [None, None, None, None, None, None, None, None, None, None], (0.0, 0)], - [[None,None,None,None,None,None,None,None,None,0], - [None,None,None,None,None,None,None,None,None,None], + [[None, None, None, None, None, None, None, None, None, 0], + [None, None, None, None, None, None, None, None, None, None], (0.0, 0)], - [[None,None,None,None,None,None,None,None,None,0], - [None,None,None,None,None,None,None,None,None,0], + [[None, None, None, None, None, None, None, None, None, 0], + [None, None, None, None, None, None, None, None, None, 0], (0.0, 1)], - [[0,0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0,0], + [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0], (0, 10)], - [[9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87], - [9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87], + [[9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87], + [9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87], (0.9999999999999998, 10)], - [[9.3,2.2,5.4,7.2,6.4,7.6,3.8,1.8,8.4,0.2], - [0.6,3.97,5.82,8.21,1.65,4.55,6.72,9.5,7.33,2.34], + [[9.3, 2.2, 5.4, 7.2, 6.4, 7.6, 3.8, 1.8, 8.4, 0.2], + [0.6, 3.97, 5.82, 8.21, 1.65, 4.55, 6.72, 9.5, 7.33, 2.34], (-0.12720361919462056, 10)], - [[0,1,2,3,4,5,6,7,8,9], - [None,None,None,None,2,None,None,3,None,None], + [[0, 1, 2, 3, 4, 5, 6, 7, 8, 9], + [None, None, None, None, 2, None, None, 3, None, None], (0.0, 2)]]: with self.subTest(dbdata=dbdata, userdata=userdata): - self.assertEqual(compute_correlation(dbdata,userdata), expected) + self.assertEqual(compute_correlation(dbdata, userdata), expected) |