Fix issues caught by pylint

Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi

* Fix a myriad of issues caught by pylint to ensure the code passes all tests.

1 files changed, 17 insertions, 15 deletions

diff --git a/tests/unit/computations/test_correlation.py b/tests/unit/computations/test_correlation.py
index 6153c8a..9450094 100644
--- a/tests/unit/computations/test_correlation.py
+++ b/tests/unit/computations/test_correlation.py
@@ -467,26 +467,28 @@ class TestCorrelation(TestCase):
         self.assertEqual(results, [expected_results])
 
     def test_compute_correlation(self):
-        for dbdata,userdata,expected in [
-                [[None,None,None,None,None,None,None,None,None,None],
-                 [None,None,None,None,None,None,None,None,None,None],
+        """Test that the new correlation function works the same as the original
+        from genenetwork1."""
+        for dbdata, userdata, expected in [
+                [[None, None, None, None, None, None, None, None, None, None],
+                 [None, None, None, None, None, None, None, None, None, None],
                  (0.0, 0)],
-                [[None,None,None,None,None,None,None,None,None,0],
-                 [None,None,None,None,None,None,None,None,None,None],
+                [[None, None, None, None, None, None, None, None, None, 0],
+                 [None, None, None, None, None, None, None, None, None, None],
                  (0.0, 0)],
-                [[None,None,None,None,None,None,None,None,None,0],
-                 [None,None,None,None,None,None,None,None,None,0],
+                [[None, None, None, None, None, None, None, None, None, 0],
+                 [None, None, None, None, None, None, None, None, None, 0],
                  (0.0, 1)],
-                [[0,0,0,0,0,0,0,0,0,0],[0,0,0,0,0,0,0,0,0,0],
+                [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 0],
                  (0, 10)],
-                [[9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87],
-                 [9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87,9.87],
+                [[9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87],
+                 [9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87, 9.87],
                  (0.9999999999999998, 10)],
-                [[9.3,2.2,5.4,7.2,6.4,7.6,3.8,1.8,8.4,0.2],
-                 [0.6,3.97,5.82,8.21,1.65,4.55,6.72,9.5,7.33,2.34],
+                [[9.3, 2.2, 5.4, 7.2, 6.4, 7.6, 3.8, 1.8, 8.4, 0.2],
+                 [0.6, 3.97, 5.82, 8.21, 1.65, 4.55, 6.72, 9.5, 7.33, 2.34],
                  (-0.12720361919462056, 10)],
-                [[0,1,2,3,4,5,6,7,8,9],
-                 [None,None,None,None,2,None,None,3,None,None],
+                [[0, 1, 2, 3, 4, 5, 6, 7, 8, 9],
+                 [None, None, None, None, 2, None, None, 3, None, None],
                  (0.0, 2)]]:
             with self.subTest(dbdata=dbdata, userdata=userdata):
-                self.assertEqual(compute_correlation(dbdata,userdata), expected)
+                self.assertEqual(compute_correlation(dbdata, userdata), expected)