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authorFrederick Muriuki Muriithi2025-10-22 13:27:54 -0500
committerFrederick Muriuki Muriithi2025-10-22 13:27:54 -0500
commit05013c13710eccadb69746bf186eb672c2af69c4 (patch)
tree71a706fd30bf0d535a0fab737bb0e42a1667e60b /tests/integration/test_partial_correlations.py
parent977efbb54da284fb3e8476f200206d00cb8e64cd (diff)
downloadgenenetwork3-05013c13710eccadb69746bf186eb672c2af69c4.tar.gz
Fetch configs from app setting and pass them down
Fix the code to avoid using global variables holding configuration
variables to avoid the failures caused by action-at-a-distance effects
due to change of a value elsewhere.

This way, all code consistently receives the same configuration values
passed on from callers.

We pass on the following configuration settings:
* TMPDIR
* SQL_URI
* TEXTDIR
Diffstat (limited to 'tests/integration/test_partial_correlations.py')
-rw-r--r--tests/integration/test_partial_correlations.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/tests/integration/test_partial_correlations.py b/tests/integration/test_partial_correlations.py
index fc9f64f..56af260 100644
--- a/tests/integration/test_partial_correlations.py
+++ b/tests/integration/test_partial_correlations.py
@@ -221,4 +221,4 @@ def test_part_corr_api_with_mix_of_existing_and_non_existing_control_traits(
     criteria = 10
     with pytest.warns(UserWarning):
         partial_correlations_with_target_db(
-            db_conn, primary, controls, method, criteria, target)
+            db_conn, primary, controls, method, criteria, target, "/tmp")