Merge pull request #38 from genenetwork/feature/wgcna_analysis

script for wgcna analysis

1 files changed, 65 insertions, 0 deletions

diff --git a/scripts/wgcna_test_data.json b/scripts/wgcna_test_data.json
new file mode 100644
index 0000000..1d469f4
--- /dev/null
+++ b/scripts/wgcna_test_data.json
@@ -0,0 +1,65 @@
+{
+  "trait_names":["1455537_at","1425637_at","1449593_at","1421945_a_at","1450423_s_at","1423841_at","1451144_at"],
+   "trait_sample_data":[
+  {
+    "129S1/SvImJ": 7.142,
+    "A/J": 7.31,
+    "AKR/J": 7.49,
+    "B6D2F1": 6.899,
+    "BALB/cByJ": 7.172,
+    "BALB/cJ": 7.396
+  },
+  {
+    "129S1/SvImJ": 7.071,
+    "A/J": 7.05,
+    "AKR/J": 7.313,
+    "B6D2F1": 6.999,
+    "BALB/cByJ": 7.293,
+    "BALB/cJ": 7.117
+  },
+  {
+    "129S1/SvImJ": 7.221,
+    "A/J": 7.246,
+    "AKR/J": 7.754,
+    "B6D2F1": 6.866,
+    "BALB/cByJ": 6.752,
+    "BALB/cJ": 7.269
+  },
+  {
+    "129S1/SvImJ": 9.221,
+    "A/J": 9.246,
+    "AKR/J": 9.954,
+    "B6D2F1": 6.866,
+    "BALB/cByJ": 6.952,
+    "BALB/cJ": 9.269
+  },
+  {
+    "129S1/SvImJ": 7.221,
+    "A/J": 7.246,
+    "AKR/J": 7.754,
+    "B6D2F1": 6.866,
+    "BALB/cByJ": 6.752,
+    "BALB/cJ": 7.269
+  },
+  {
+    "129S1/SvImJ": 7.221,
+    "A/J": 7.246,
+    "AKR/J": 7.754,
+    "B6D2F1": 6.866,
+    "BALB/cByJ": 6.752,
+    "BALB/cJ": 7.269
+  },
+  {
+    "129S1/SvImJ": 11.221,
+    "A/J": 11.246,
+    "AKR/J": 11.1154,
+    "B6D2F1": 6.866,
+    "BALB/cByJ": 6.1152,
+    "BALB/cJ": 11.269
+  }
+   ],
+   "TOMtype": "unsigned",
+   "minModuleSize": 30,
+   "corType": "pearson"
+
+}