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| author | Frederick Muriuki Muriithi | 2021-10-25 19:19:54 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-10-25 19:19:54 +0300 |
| commit | c13afb3af166d2b01e4f9fd9b09bb231f0a63cb1 (patch) | |
| tree | c831f28534ebf6432972e107dbd6da5daef81088 /scripts/wgcna_analysis.R | |
| parent | 783f302c5d4729eb0b5fb6ba79180b7cd97764a5 (diff) | |
| download | genenetwork3-c13afb3af166d2b01e4f9fd9b09bb231f0a63cb1.tar.gz | |
Start implementation of `fetch_tissue_correlations` and dependencies
* compare_tissue_correlation_absolute_values: New function. Complete. Used for
sorting of tissue correlation values
* fetch_symbol_value_pair_dict: New function. Complete. Maps gene symbols to
tissue expression data
* fetch_gene_symbol_tissue_value_dict: New function. Complete. Wrapper for
`gn3.db.correlations.fetch_symbol_value_pair_dict` function
* fetch_tissue_probeset_xref_info: New function. Complete. Retrieves the
Probeset XRef information for tissues from the database.
* correlations_of_all_tissue_traits: Stub. Dependencies not completed yet.
* build_temporary_tissue_correlations_table: Stub. Dependencies not completed
yet.
* fetch_tissue_correlations: New function. Incomplete. This function calls (a)
stub(s) function(s) which is/are under development still.
Diffstat (limited to 'scripts/wgcna_analysis.R')
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