Add genenetwork3 package definition

1 files changed, 78 insertions, 0 deletions

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+;;; guix.scm --- genenetwork3 rest Api guix bootstrapping file.
+;;;
+;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com>
+;;;
+;;; This file is part of genenetwork3.
+;;;
+;;; genenetwork3 is free software: you can redistribute it and/or
+;;; modify it under the terms of the GNU General Public License as
+;;; published by the Free Software Foundation; either version 3 of the
+;;; License, or (at your option) any later version.
+;;;
+;;; sheepdog is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+;;; General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with genenetwork3. If not, see https://www.gnu.org/licenses/.
+
+(use-modules
+ (srfi srfi-1)
+ (srfi srfi-26)
+ (ice-9 match)
+ (ice-9 popen)
+ (ice-9 rdelim)
+ (gnu packages base)
+ (gnu packages check)
+ (gnu packages databases)
+ (gnu packages python)
+ (gnu packages python-check)
+ (gnu packages python-web)
+ (gnu packages python-xyz)
+ ((guix build utils) #:select (with-directory-excursion))
+ (guix build-system python)
+ (guix gexp)
+ (guix git-download)
+ (guix licenses)
+ (guix packages))
+
+(define %source-dir (dirname (current-filename)))
+
+(define git-file?
+  (let* ((pipe (with-directory-excursion %source-dir
+                 (open-pipe* OPEN_READ "git" "ls-files")))
+         (files (let loop ((lines '()))
+                  (match (read-line pipe)
+                    ((? eof-object?)
+                     (reverse lines))
+                    (line
+                     (loop (cons line lines))))))
+         (status (close-pipe pipe)))
+    (lambda (file stat)
+      (match (stat:type stat)
+        ('directory #t)
+        ((or 'regular 'symlink)
+         (any (cut string-suffix? <> file) files))
+        (_ #f)))))
+
+(package
+  (name "genenetwork3.git")
+  (version "0.0.1")
+  (source (local-file %source-dir
+                      #:recursive? #t
+                      #:select? git-file?))
+  (propagated-inputs `(("coreutils" ,coreutils)
+                       ("python" ,python-wrapper)
+                       ("python-flask" ,python-flask)
+                       ("python-pylint" python-pylint)
+                       ("python-numpy" ,python-numpy)
+                       ("python-mypy" ,python-mypy)
+                       ("python-mypy-extensions" ,python-mypy-extensions)
+                       ("python-redis" ,python-redis)
+                       ("python-pylint" ,python-pylint)))
+  (build-system python-build-system)
+  (home-page "https://github.com/genenetwork/genenetwork3")
+  (synopsis "GeneNetwork3 API for data science and machine learning.")
+  (description "GeneNetwork3 API for data science and machine learning.")
+  (license agpl3+))