Refactor/clean up correlations (#4)

* initial commit for Refactor/clean-up-correlation

* add python scipy dependency

* initial commit for sample correlation

* initial commit for sample correlation endpoint

* initial commit for integration and unittest

* initial commit for registering  correlation blueprint

* add and modify unittest and integration tests for correlation

* Add compute compute_all_sample_corr   method for correlation

* add scipy to requirement txt file

* add tissue correlation for trait list

* add unittest for tissue correlation

* add lit correlation for trait list

* add unittests for lit correlation for trait list

* modify lit correlarion for trait list

* add unittests for lit correlation for trait list

* add correlation metho  in dynamic url

* add file format for expected structure input  while doing sample correlation

* modify input data structure -> add  trait id

* update tests for sample r correlation

* add compute all lit correlation method

* add endpoint for computing lit_corr

* add unit and integration tests for computing lit corr

* add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation

* add unittest and integration tests for tissue correlation

Co-authored-by: BonfaceKilz <bonfacemunyoki@gmail.com>

1 files changed, 1 insertions, 0 deletions

diff --git a/guix.scm b/guix.scm
index 45bb3fa..503694c 100644
--- a/guix.scm
+++ b/guix.scm
@@ -73,6 +73,7 @@
                        ("python-flask" ,python-flask)
                        ("python-pylint" python-pylint)
                        ("python-numpy" ,python-numpy)
+                       ("python-scipy" ,python-scipy)
                        ("python-mypy" ,python-mypy)
                        ("python-mypy-extensions" ,python-mypy-extensions)
                        ("python-redis" ,python-redis)