From 43d1bb7f6cd2b5890d5b3eb7c357caafda25a35c Mon Sep 17 00:00:00 2001 From: Alexander Kabui Date: Tue, 16 Mar 2021 10:36:58 +0300 Subject: Refactor/clean up correlations (#4) * initial commit for Refactor/clean-up-correlation * add python scipy dependency * initial commit for sample correlation * initial commit for sample correlation endpoint * initial commit for integration and unittest * initial commit for registering correlation blueprint * add and modify unittest and integration tests for correlation * Add compute compute_all_sample_corr method for correlation * add scipy to requirement txt file * add tissue correlation for trait list * add unittest for tissue correlation * add lit correlation for trait list * add unittests for lit correlation for trait list * modify lit correlarion for trait list * add unittests for lit correlation for trait list * add correlation metho in dynamic url * add file format for expected structure input while doing sample correlation * modify input data structure -> add trait id * update tests for sample r correlation * add compute all lit correlation method * add endpoint for computing lit_corr * add unit and integration tests for computing lit corr * add /api/correlation/tissue_corr/{corr_method} endpoint for tissue correlation * add unittest and integration tests for tissue correlation Co-authored-by: BonfaceKilz --- guix.scm | 1 + 1 file changed, 1 insertion(+) (limited to 'guix.scm') diff --git a/guix.scm b/guix.scm index 45bb3fa..503694c 100644 --- a/guix.scm +++ b/guix.scm @@ -73,6 +73,7 @@ ("python-flask" ,python-flask) ("python-pylint" python-pylint) ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) ("python-mypy" ,python-mypy) ("python-mypy-extensions" ,python-mypy-extensions) ("python-redis" ,python-redis) -- cgit v1.2.3