pass user input to call script

1 files changed, 10 insertions, 2 deletions

diff --git a/gn3/api/wgcna.py b/gn3/api/wgcna.py
index a3bacdd..5d49493 100644
--- a/gn3/api/wgcna.py
+++ b/gn3/api/wgcna.py
@@ -1,13 +1,21 @@
 """endpoint to run wgcna analysis"""
 from flask import Blueprint
 from flask import request
+from flask import current_app
+
+from gn3.computations.wgcna import call_wgcna_script
 
 wgcna = Blueprint("wgcna", __name__)
 
 
 @wgcna.route("/run_wgcna", methods=["POST"])
 def run_wgcna():
+    """run wgcna:output should be a json with a the data"""
+
+    wgcna_data = request.json
+
+    wgcna_script = current_app.config["WGCNA_RSCRIPT"]
 
-    _wgcna_data = request.json
+    results = call_wgcna_script(wgcna_script, wgcna_data)
 
-    return "success", 200
+    return results, 200