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authorBonfaceKilz2022-04-06 16:36:52 +0300
committerBonfaceKilz2022-04-07 11:54:28 +0300
commitb18de873dbead76276ee5077bc8a2afe78f61606 (patch)
treed432548c9bb820653cb03e98324284f14bd699e1 /gn3
parentdc71058e894c9857de68c7844bfc4b813c0532da (diff)
downloadgenenetwork3-b18de873dbead76276ee5077bc8a2afe78f61606.tar.gz
Use case attribute id inside brackets if present during insertions
* gn3/db/sample_data.py (delete_sample_data): If an id is present in the column header, use it. * tests/unit/db/test_sample_data.py (test_delete_sample_data): Update tests to capture the above.
Diffstat (limited to 'gn3')
-rw-r--r--gn3/db/sample_data.py25
1 files changed, 17 insertions, 8 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py
index 518d2a2..de90162 100644
--- a/gn3/db/sample_data.py
+++ b/gn3/db/sample_data.py
@@ -275,14 +275,23 @@ def delete_sample_data(
def __delete_case_attribute(conn, strain_id, case_attr, inbredset_id):
with conn.cursor() as cursor:
- cursor.execute(
- "DELETE FROM CaseAttributeXRefNew "
- "WHERE StrainId = %s AND CaseAttributeId = "
- "(SELECT CaseAttributeId FROM "
- "CaseAttribute WHERE Name = %s) "
- "AND InbredSetId = %s",
- (strain_id, case_attr, inbredset_id),
- )
+ (id_, name) = parse_csv_column(case_attr)
+ if id_:
+ cursor.execute(
+ "DELETE FROM CaseAttributeXRefNew "
+ "WHERE StrainId = %s AND CaseAttributeId = %s "
+ "AND InbredSetId = %s",
+ (strain_id, id_, inbredset_id),
+ )
+ else:
+ cursor.execute(
+ "DELETE FROM CaseAttributeXRefNew "
+ "WHERE StrainId = %s AND CaseAttributeId = "
+ "(SELECT CaseAttributeId FROM "
+ "CaseAttribute WHERE Name = %s) "
+ "AND InbredSetId = %s",
+ (strain_id, name, inbredset_id),
+ )
return cursor.rowcount
strain_id, data_id, inbredset_id = get_sample_data_ids(