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| author | Munyoki Kilyungi | 2024-01-10 12:51:18 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2024-01-10 13:56:55 +0300 |
| commit | a3f0be01324f0e9430e6376e70537a8c90a41378 (patch) | |
| tree | 4c9278cb6f04d517ad2c3755e36eecfbd9cb821c /gn3 | |
| parent | 19cb781f5eb96d71d0bebdd8ec5c9930e30f1b58 (diff) | |
| download | genenetwork3-a3f0be01324f0e9430e6376e70537a8c90a41378.tar.gz | |
Switch to gnt:belongsToSpecies in genotype queries.
* gn3/api/metadata.py (genotypes): Use gnt:belongsToSpecies instead of
xkos:classifiedUnder when querying for species.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/api/metadata.py | 11 |
1 files changed, 6 insertions, 5 deletions
diff --git a/gn3/api/metadata.py b/gn3/api/metadata.py index 6dafef2..7657fe3 100644 --- a/gn3/api/metadata.py +++ b/gn3/api/metadata.py @@ -499,15 +499,15 @@ $prefix CONSTRUCT { ?genotype ?predicate ?object . - ?species rdfs:label ?speciesName . + ?species gnt:shortName ?speciesShortName . } WHERE { ?genotype rdf:type gnc:Genotype ; rdfs:label "$name" ; ?predicate ?object . OPTIONAL { - ?species ^xkos:classifiedUnder ?genotype ; - rdfs:label ?speciesName . - } + ?species ^gnt:belongsToSpecies ?genotype ; + gnt:shortName ?speciesShortName . + } . } """).substitute(prefix=RDF_PREFIXES, name=name) _context = { @@ -524,7 +524,8 @@ CONSTRUCT { "mb2016": "gnt:mb2016", "sequence": "gnt:hasSequence", "source": "gnt:hasSource", - "species": "xkos:classifiedUnder", + "species": "gnt:belongsToSpecies", + "speciesName": "gnt:shortName", "alternateSource": "gnt:hasAltSourceName", "comments": "rdfs:comments", "chrNum": { |