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authorFrederick Muriuki Muriithi2023-10-12 03:18:19 +0300
committerFrederick Muriuki Muriithi2023-10-12 03:18:19 +0300
commit83a6c32866d8c048d14912e5b99ecbfe095a6370 (patch)
tree2e11b62d0ec73ca079d303e574527c1bfaf579ce /gn3
parent2a99a895be2e1f917e049bd242a4ed1b68d719a5 (diff)
downloadgenenetwork3-83a6c32866d8c048d14912e5b99ecbfe095a6370.tar.gz
CaseAttribute: Bug: Fix bugs with rejecting diffs.
Diffstat (limited to 'gn3')
-rw-r--r--gn3/case_attributes.py23
1 files changed, 15 insertions, 8 deletions
diff --git a/gn3/case_attributes.py b/gn3/case_attributes.py
index b1d1434..60616e4 100644
--- a/gn3/case_attributes.py
+++ b/gn3/case_attributes.py
@@ -305,7 +305,8 @@ def __apply_diff__(
def __reject_diff__(conn: Connection,
inbredset_id: int,
user: User,
- diff_filename: Path) -> Path:
+ diff_filename: Path,
+ diff: dict) -> Path:
"""
Reject the changes in the diff at `diff_filename` to the data in the
database if the user has appropriate privileges.
@@ -313,9 +314,9 @@ def __reject_diff__(conn: Connection,
required_access(
inbredset_id, ("system:inbredset:edit-case-attribute",
"system:inbredset:apply-case-attribute-edit"))
- the_diff == __load_diff__(diff_filename)
- __save_diff__(conn, the_diff, EditStatus.rejected)
- os.remove(diff_filename)
+ __save_diff__(conn, diff, EditStatus.rejected)
+ new_path = Path(diff_filename.parent, f"{diff_filename.stem}-rejected{diff_filename.suffix}")
+ os.rename(diff_filename, new_path)
return diff_filename
@caseattr.route("/<int:inbredset_id>/add", methods=["POST"])
@@ -381,7 +382,7 @@ def edit_case_attributes(inbredset_id: int) -> Response:
"diff-status": "queued",
"message": ("The changes to the case-attributes have been "
"queued for approval."),
- "diff-filename": diff_filename
+ "diff-filename": str(diff_filename.name)
})
@caseattr.route("/approve/<path:filename>", methods=["POST"])
@@ -393,9 +394,15 @@ def approve_case_attributes_diff(inbredset_id: int) -> Response:
raise NotImplementedError
@caseattr.route("/reject/<path:filename>", methods=["POST"])
-def reject_case_attributes_diff(inbredset_id: int) -> Response:
+def reject_case_attributes_diff(filename: str) -> Response:
"""Reject the changes to the case attributes in the diff."""
+ diff_dir = Path(current_app.config.get("TMPDIR"), CATTR_DIFFS_DIR)
+ diff_filename = Path(diff_dir, filename)
+ the_diff = __load_diff__(diff_filename)
with (require_oauth.acquire("profile resource") as the_token,
database_connection(current_app.config["SQL_URI"]) as conn):
- __reject_diff__(conn, inbredset_id, the_token.user, diff_filename)
- raise NotImplementedError
+ __reject_diff__(conn, the_diff["inbredset_id"], the_token.user, diff_filename, the_diff)
+ return jsonify({
+ "message": f"Rejected diff successfully",
+ "diff_filename": diff_filename.name
+ })