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| author | BonfaceKilz | 2021-05-19 21:44:58 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-05-20 23:25:59 +0300 |
| commit | 7565712744fdda4b530e4f40dd2765617546c393 (patch) | |
| tree | bfca932aa9efbaa4d18be6c592e748c202213307 /gn3 | |
| parent | 28ebb9434038121abb80e602714603a2ec6e4e48 (diff) | |
| download | genenetwork3-7565712744fdda4b530e4f40dd2765617546c393.tar.gz | |
db: phenotypes: Put mapping def after dataclass
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/db/phenotypes.py | 26 |
1 files changed, 13 insertions, 13 deletions
diff --git a/gn3/db/phenotypes.py b/gn3/db/phenotypes.py index 645c0af..be5fb7b 100644 --- a/gn3/db/phenotypes.py +++ b/gn3/db/phenotypes.py @@ -56,20 +56,20 @@ class PublishXRef: comments: Optional[str] = None -# Mapping from the Phenotype dataclass to the actual column names in the +# Mapping from the PublishXRef dataclass to the actual column names in the # database -phenotype_column_mapping = { - "id_": "id", - "pre_pub_description": "Pre_publication_description", - "post_pub_description": "Post_publication_description", - "original_description": "Original_description", - "units": "Units", - "pre_pub_abbrevition": "Pre_publication_abbreviation", - "post_pub_abbreviation": "Post_publication_abbreviation", - "lab_code": "Lab_code", - "submitter": "Submitter", - "owner": "Owner", - "authorized_users": "Authorized_Users", +publish_x_ref_mapping = { + "id_": "Id", + "inbred_set_id": "InbredSetId", + "phenotype_id": "PhenotypeId", + "publication_id": "PublicationId", + "data_id": "DataId", + "mean": "mean", + "locus": "locus", + "lrs": "lrs", + "additive": "additive", + "sequence": "sequence", + "comments": "comments", } |