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author | BonfaceKilz | 2022-03-18 15:39:19 +0300 |
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committer | BonfaceKilz | 2022-03-18 15:50:00 +0300 |
commit | 490a9c2306d9b05e132b1fcef6cd65a985a14b71 (patch) | |
tree | d39a582509e4e26c8481324f75d79a793b3620cd /gn3 | |
parent | 16367dab9248d3aa2660e0b5cafdce25e8f7067c (diff) | |
download | genenetwork3-490a9c2306d9b05e132b1fcef6cd65a985a14b71.tar.gz |
Create new function for cleaning individual fields in csv text
* gn3/csvcmp.py (clean_csv_text): New function.
* tests/unit/test_csvcmp.py: Import "csv_text".
(test_clean_csv_text): Test case for the above.
Diffstat (limited to 'gn3')
-rw-r--r-- | gn3/csvcmp.py | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/gn3/csvcmp.py b/gn3/csvcmp.py index 975814a..10c5d3e 100644 --- a/gn3/csvcmp.py +++ b/gn3/csvcmp.py @@ -48,6 +48,15 @@ def remove_insignificant_edits(diff_data, epsilon=0.001): return diff_data +def clean_csv_text(csv_text: str) -> str: + """Remove extra white space elements in all elements of the CSV file""" + _csv_text = [] + for line in csv_text.strip().split("\n"): + _csv_text.append( + ",".join([el.strip() for el in line.split(",")])) + return "\n".join(_csv_text) + + def csv_diff(base_csv, delta_csv, tmp_dir="/tmp") -> dict: """Diff 2 csv strings""" base_csv_list = base_csv.strip().split("\n") |