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| author | Muriithi Frederick Muriuki | 2021-08-27 15:51:27 +0300 |
|---|---|---|
| committer | Muriithi Frederick Muriuki | 2021-08-27 15:51:27 +0300 |
| commit | 28fde00ee2835d404157652548a4265be3accede (patch) | |
| tree | 1ceeb9ea554dce4d3f6006a2138b9b6c3d1f074f /gn3 | |
| parent | 1a3901b174d00af8fa7f5ae78b810de66024b5ab (diff) | |
| download | genenetwork3-28fde00ee2835d404157652548a4265be3accede.tar.gz | |
Provide intermediate data in final results
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Seeing as not every requirement/feature has been migrated over at this time,
this commit just provides all the intermediate data representations in the
final return of the function for later use down the line.
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/computations/heatmap.py | 13 |
1 files changed, 7 insertions, 6 deletions
diff --git a/gn3/computations/heatmap.py b/gn3/computations/heatmap.py index 2f92048..3e96ed2 100644 --- a/gn3/computations/heatmap.py +++ b/gn3/computations/heatmap.py @@ -149,22 +149,22 @@ def heatmap_data(formd, search_result, conn: Any): def __retrieve_traitlist_and_datalist(threshold, fullname): trait = retrieve_trait_info(threshold, fullname, conn) - return ( - trait, - export_trait_data(retrieve_trait_data(trait, conn), strainlist)) + return (trait, retrieve_trait_data(trait, conn)) traits_details = [ __retrieve_traitlist_and_datalist(threshold, fullname) for fullname in search_result] traits_list = tuple(x[0] for x in traits_details) - traits_data_list = tuple(x[1] for x in traits_details) + traits_data_list = [x[1] for x in traits_details] + exported_traits_data_list = tuple( + export_trait_data(td, strainlist) for x in traits_data_list) return { "target_description_checked": formd.formdata.getvalue( "targetDescriptionCheck", ""), "cluster_checked": cluster_checked, "slink_data": ( - slink(cluster_traits(traits_data_list)) + slink(cluster_traits(exported_traits_data_list)) if cluster_checked else False), "sessionfile": formd.formdata.getvalue("session"), "genotype": genotype, @@ -173,7 +173,8 @@ def heatmap_data(formd, search_result, conn: Any): "ppolar": formd.ppolar, "mpolar":formd.mpolar, "traits_list": traits_list, - "traits_data_list": traits_data_list + "traits_data_list": traits_data_list, + "exported_traits_data_list": exported_traits_data_list } def compute_heatmap_order( |