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author | Alexander Kabui | 2021-11-10 11:38:35 +0300 |
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committer | BonfaceKilz | 2021-11-11 09:20:26 +0300 |
commit | 01ddb7300b451108983327ae11f69e265a2ec2e0 (patch) | |
tree | efc91a923b60bd46887a6bfd76a7b5ba8cdccb8e /gn3 | |
parent | 905626a2a27332f2fab74195bbcf615bf5c5b6bf (diff) | |
download | genenetwork3-01ddb7300b451108983327ae11f69e265a2ec2e0.tar.gz |
fix:spawned processes memory issues
Diffstat (limited to 'gn3')
-rw-r--r-- | gn3/computations/correlations.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/gn3/computations/correlations.py b/gn3/computations/correlations.py index 8eaa523..8302afc 100644 --- a/gn3/computations/correlations.py +++ b/gn3/computations/correlations.py @@ -1,6 +1,7 @@ """module contains code for correlations""" import math import multiprocessing +from contextlib import closing from typing import List from typing import Tuple @@ -136,7 +137,7 @@ def fast_compute_all_sample_correlation(this_trait, processed_values.append((trait_name, corr_method, *list(zip(*list(filter_shared_sample_keys( this_trait_samples, target_trait_data)))) )) - with multiprocessing.Pool() as pool: + with closing(multiprocessing.Pool()) as pool: results = pool.starmap(compute_sample_r_correlation, processed_values) for sample_correlation in results: |