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| author | Frederick Muriuki Muriithi | 2023-08-28 10:33:53 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2023-10-10 11:12:44 +0300 |
| commit | 00a91a180b28984dafd01c5544df51943e7a5bee (patch) | |
| tree | 7e7f67f11d4e55340f665eda0a468c7613c1f336 /gn3 | |
| parent | 3757c2bc9adcf687f1653c2b903aa1edbcafafb1 (diff) | |
| download | genenetwork3-00a91a180b28984dafd01c5544df51943e7a5bee.tar.gz | |
Bug: Fix missing cursor object.
Diffstat (limited to 'gn3')
| -rw-r--r-- | gn3/case_attributes.py | 9 |
1 files changed, 5 insertions, 4 deletions
diff --git a/gn3/case_attributes.py b/gn3/case_attributes.py index 39052f9..1160678 100644 --- a/gn3/case_attributes.py +++ b/gn3/case_attributes.py @@ -53,7 +53,8 @@ def __case_attributes_by_inbred_set__( Retrieve Case-Attributes by their InbredSet ID. Do not call this outside this module. """ - cursor.execute( + with conn.cursor(cursorclass=DictCursor) as cursor: + cursor.execute( "SELECT ca.Name AS CaseAttributeName, " "caxrn.Value AS CaseAttributeValue, s.Name AS StrainName, " "s.Name2 AS StrainName2, s.Symbol, s.Alias " @@ -65,8 +66,8 @@ def __case_attributes_by_inbred_set__( "WHERE ca.InbredSetId=%(inbredset_id)s " "ORDER BY StrainName", {"inbredset_id": inbredset_id}) - return tuple( - reduce(__by_strain__, cursor.fetchall(), {}).values()) + return tuple( + reduce(__by_strain__, cursor.fetchall(), {}).values()) @caseattr.route("/<int:inbredset_id>/values", methods=["GET"]) def inbredset_case_attribute_values(inbredset_id: int) -> Response: @@ -149,7 +150,7 @@ def edit_case_attributes(inbredset_id: int) -> Response: return jsonify({ "diff-status": "queued", "message": ("The changes to the case-attributes have been " - "queued for approval.") + "queued for approval."), "diff-filename": diff_filename }) |