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authorJohn Nduli2024-10-18 15:06:36 +0300
committerFrederick Muriuki Muriithi2024-10-18 09:28:40 -0500
commit86b81be8c67cf82e8f26a7f84cbdc5df7198e214 (patch)
tree7e27fe0d5876d6c473b61bcacf5e73a9a8d83a39 /gn3/sqlite_db_utils.py
parent27531c0a1350097ca36a555b8546bc282948de04 (diff)
downloadgenenetwork3-86b81be8c67cf82e8f26a7f84cbdc5df7198e214.tar.gz
refactor: replace gn3.auth.db with gn3.sqlite_db_utils and drop all refs to gn3.auth
Diffstat (limited to 'gn3/sqlite_db_utils.py')
-rw-r--r--gn3/sqlite_db_utils.py72
1 files changed, 72 insertions, 0 deletions
diff --git a/gn3/sqlite_db_utils.py b/gn3/sqlite_db_utils.py
new file mode 100644
index 0000000..5cd230f
--- /dev/null
+++ b/gn3/sqlite_db_utils.py
@@ -0,0 +1,72 @@
+"""Handle connection to auth database."""
+import sqlite3
+import logging
+import contextlib
+from typing import Any, Callable, Iterator, Protocol
+
+import traceback
+
+class DbConnection(Protocol):
+    """Type annotation for a generic database connection object."""
+    def cursor(self) -> Any:
+        """A cursor object"""
+
+    def commit(self) -> Any:
+        """Commit the transaction."""
+
+    def rollback(self) -> Any:
+        """Rollback the transaction."""
+
+
+class DbCursor(Protocol):
+    """Type annotation for a generic database cursor object."""
+    def execute(self, *args, **kwargs) -> Any:
+        """Execute a single query"""
+
+    def executemany(self, *args, **kwargs) -> Any:
+        """
+        Execute parameterized SQL statement sql against all parameter sequences
+        or mappings found in the sequence parameters.
+        """
+
+    def fetchone(self, *args, **kwargs):
+        """Fetch single result if present, or `None`."""
+
+    def fetchmany(self, *args, **kwargs):
+        """Fetch many results if present or `None`."""
+
+    def fetchall(self, *args, **kwargs):
+        """Fetch all results if present or `None`."""
+
+
+@contextlib.contextmanager
+def connection(db_path: str, row_factory: Callable = sqlite3.Row) -> Iterator[DbConnection]:
+    """Create the connection to the auth database."""
+    logging.debug("SQLite3 DB Path: '%s'.", db_path)
+    conn = sqlite3.connect(db_path)
+    conn.row_factory = row_factory
+    conn.set_trace_callback(logging.debug)
+    conn.execute("PRAGMA foreign_keys = ON")
+    try:
+        yield conn
+    except sqlite3.Error as exc:
+        conn.rollback()
+        logging.debug(traceback.format_exc())
+        raise exc
+    finally:
+        conn.commit()
+        conn.close()
+
+@contextlib.contextmanager
+def cursor(conn: DbConnection) -> Iterator[DbCursor]:
+    """Get a cursor from the given connection to the auth database."""
+    cur = conn.cursor()
+    try:
+        yield cur
+    except sqlite3.Error as exc:
+        conn.rollback()
+        logging.debug(traceback.format_exc())
+        raise exc
+    finally:
+        conn.commit()
+        cur.close()