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| author | Frederick Muriuki Muriithi | 2021-09-28 08:28:42 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2021-09-28 11:23:46 +0300 |
| commit | 767eb96db12476f741bb5197bda7555c29e79b55 (patch) | |
| tree | a91aa2435606e549732552b70615c3e31d120ce2 /gn3/heatmaps.py | |
| parent | 674dc56b9df38e7cf1bbc65a2fc6bf3cc16f7231 (diff) | |
| download | genenetwork3-767eb96db12476f741bb5197bda7555c29e79b55.tar.gz | |
Approximate single-spectrum colour scale in GN1
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* To provide a somewhat similar experience to GeneNetwork1, this commit
approximates the single-spectrum colour scale in GeneNetwork1 for the
heatmaps in GeneNetwork3.
Work to get the multiple-spectrum colour sc(ales/hemes) will be done in
other commits, since that might require digging even deeper into Plotly's
guts to figure out.
Diffstat (limited to 'gn3/heatmaps.py')
| -rw-r--r-- | gn3/heatmaps.py | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/gn3/heatmaps.py b/gn3/heatmaps.py index a36940d..2ef2d16 100644 --- a/gn3/heatmaps.py +++ b/gn3/heatmaps.py @@ -326,9 +326,7 @@ def generate_clustered_heatmap( data, clustering_data, image_filename_prefix, x_axis=None, x_label: str = "", y_axis=None, y_label: str = "", output_dir: str = TMPDIR, - colorscale=( - (0.0, '#5D5D5D'), (0.4999999999999999, '#ABABAB'), - (0.5, '#F5DE11'), (1.0, '#FF0D00'))): + colorscale=((0.0, '#0000FF'), (0.5, '#00FF00'), (1.0, '#FF0000'))): """ Generate a dendrogram, and heatmaps for each chromosome, and put them all into one plot. |