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| author | Munyoki Kilyungi | 2024-09-17 14:59:48 +0300 |
|---|---|---|
| committer | John Nduli Kilyungi | 2024-09-18 08:32:34 +0300 |
| commit | 2a95565d9d156ea4404a0aaeb15ae5c7a85f59c2 (patch) | |
| tree | c58b2f85d24580ab4b4cc1a3d223bff992fb213a /gn3/db | |
| parent | 471de9ace138eba6eeeceff018f729491e650212 (diff) | |
| download | genenetwork3-2a95565d9d156ea4404a0aaeb15ae5c7a85f59c2.tar.gz | |
Fetch symbol by it's name.
The RDF ttl files were updated to have:
comment gnt:symbol "name" .
instead of:
comment gnt:symbol symbolQname .
* gn3/db/rdf/wiki.py (get_wiki_entries_by_symbol): Fetch symbol using
it's string literal name.
(get_comment_history): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/rdf/wiki.py | 10 |
1 files changed, 4 insertions, 6 deletions
diff --git a/gn3/db/rdf/wiki.py b/gn3/db/rdf/wiki.py index 2864b2b..c278ed8 100644 --- a/gn3/db/rdf/wiki.py +++ b/gn3/db/rdf/wiki.py @@ -62,7 +62,7 @@ def get_wiki_entries_by_symbol( $prefix CONSTRUCT { - ?comment rdfs:label ?symbolName; + ?comment rdfs:label ?symbol; gnt:reason ?reason ; gnt:species ?species ; dct:references ?pmid ; @@ -75,13 +75,12 @@ CONSTRUCT { dct:created ?created ; dct:identifier ?id_ . } FROM $graph WHERE { - ?symbolId rdfs:label ?symbolName . ?comment rdfs:label ?text_ ; - gnt:symbol ?symbolId ; + gnt:symbol ?symbol ; rdf:type gnc:GNWikiEntry ; dct:identifier ?id_ ; dct:created ?createTime . - FILTER ( LCASE(?symbolName) = LCASE('$symbol') ) . + FILTER ( LCASE(?symbol) = LCASE('$symbol') ) . { SELECT (MAX(?vers) AS ?max) ?id_ WHERE { ?comment dct:identifier ?id_ ; @@ -146,10 +145,9 @@ CONSTRUCT { gnt:hasVersion ?version ; dct:created ?created . } FROM $graph WHERE { - ?symbolId rdfs:label ?symbolName . ?comment rdf:type gnc:GNWikiEntry ; rdfs:label ?text_ ; - gnt:symbol ?symbolId ; + gnt:symbol ?symbol ; dct:created ?createTime ; dct:hasVersion ?version ; dct:identifier $comment_id ; |