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authorFrederick Muriuki Muriithi2021-09-22 07:53:53 +0300
committerFrederick Muriuki Muriithi2021-09-22 07:57:21 +0300
commitcd7f301688fd9780df1f842f8bd2b7602775ba1f (patch)
treecdbcf8077c532c1b5ba7bc0c934932c1a6eb58ab /gn3/db
parent5892ffc7488b0c9cbb4ea08fd5c5f8648e0baea8 (diff)
downloadgenenetwork3-cd7f301688fd9780df1f842f8bd2b7602775ba1f.tar.gz
Fix pylint errors
* Add missing function and module docstrings * Remove unused imports * Fix import order * Rework some code sections to fix issues * Disable some pylint errors.
Diffstat (limited to 'gn3/db')
-rw-r--r--gn3/db/genotypes.py1
-rw-r--r--gn3/db/traits.py2
2 files changed, 2 insertions, 1 deletions
diff --git a/gn3/db/genotypes.py b/gn3/db/genotypes.py
index 9d052d9..919c539 100644
--- a/gn3/db/genotypes.py
+++ b/gn3/db/genotypes.py
@@ -115,6 +115,7 @@ def parse_genotype_marker(line: str, geno_obj: dict, parlist: list):
Reworks
https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/utility/gen_geno_ob.py#L143-L190
"""
+ # pylint: disable=W0702
marker_row = [item.strip() for item in line.split("\t")]
geno_table = {
geno_obj["mat"]: -1, geno_obj["pat"]: 1, geno_obj["het"]: 0,
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index bfe887e..747ed27 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -46,7 +46,7 @@ def update_sample_data(conn: Any,
count: Union[int, str]):
"""Given the right parameters, update sample-data from the relevant
table."""
- # pylint: disable=[R0913, R0914]
+ # pylint: disable=[R0913, R0914, C0103]
STRAIN_ID_SQL: str = "UPDATE Strain SET Name = %s WHERE Id = %s"
PUBLISH_DATA_SQL: str = ("UPDATE PublishData SET value = %s "
"WHERE StrainId = %s AND Id = %s")