From cd7f301688fd9780df1f842f8bd2b7602775ba1f Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 22 Sep 2021 07:53:53 +0300
Subject: Fix pylint errors

* Add missing function and module docstrings
* Remove unused imports
* Fix import order
* Rework some code sections to fix issues
* Disable some pylint errors.
---
 gn3/db/genotypes.py | 1 +
 gn3/db/traits.py    | 2 +-
 2 files changed, 2 insertions(+), 1 deletion(-)

(limited to 'gn3/db')

diff --git a/gn3/db/genotypes.py b/gn3/db/genotypes.py
index 9d052d9..919c539 100644
--- a/gn3/db/genotypes.py
+++ b/gn3/db/genotypes.py
@@ -115,6 +115,7 @@ def parse_genotype_marker(line: str, geno_obj: dict, parlist: list):
     Reworks
     https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/utility/gen_geno_ob.py#L143-L190
     """
+    # pylint: disable=W0702
     marker_row = [item.strip() for item in line.split("\t")]
     geno_table = {
         geno_obj["mat"]: -1, geno_obj["pat"]: 1, geno_obj["het"]: 0,
diff --git a/gn3/db/traits.py b/gn3/db/traits.py
index bfe887e..747ed27 100644
--- a/gn3/db/traits.py
+++ b/gn3/db/traits.py
@@ -46,7 +46,7 @@ def update_sample_data(conn: Any,
                        count: Union[int, str]):
     """Given the right parameters, update sample-data from the relevant
     table."""
-    # pylint: disable=[R0913, R0914]
+    # pylint: disable=[R0913, R0914, C0103]
     STRAIN_ID_SQL: str = "UPDATE Strain SET Name = %s WHERE Id = %s"
     PUBLISH_DATA_SQL: str = ("UPDATE PublishData SET value = %s "
                              "WHERE StrainId = %s AND Id = %s")
-- 
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