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| author | Munyoki Kilyungi | 2023-04-14 15:37:31 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2023-04-17 15:24:36 +0300 |
| commit | d04779286b49346946120a5801509ba80ee987ba (patch) | |
| tree | e3ff261fbb2b3b906a489a6d571c4d56fc19c724 /gn3/db | |
| parent | 8af8105444522c2c71b5ddd36a550e964cddffbf (diff) | |
| download | genenetwork3-d04779286b49346946120a5801509ba80ee987ba.tar.gz | |
Create new endpoint for fetching GeneRIF entries
* gn3/api/metadata.py: Import Template, sparql_query and RDF_PREFIXES.
(get_genewiki_entries): New endpoint.
* gn3/db/rdf.py: Add new constant for storing rdf prefixes.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/rdf.py | 15 |
1 files changed, 15 insertions, 0 deletions
diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py index deecefa..3e8d513 100644 --- a/gn3/db/rdf.py +++ b/gn3/db/rdf.py @@ -10,6 +10,21 @@ from pymonad.maybe import Just from gn3.monads import MonadicDict +RDF_PREFIXES = """PREFIX dct: <http://purl.org/dc/terms/> +PREFIX foaf: <http://xmlns.com/foaf/0.1/> +PREFIX generif: <http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=> +PREFIX gn: <http://genenetwork.org/> +PREFIX owl: <http://www.w3.org/2002/07/owl#> +PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/> +PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> +PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> +PREFIX taxon: <http://purl.uniprot.org/taxonomy/> +PREFIX up: <http://purl.uniprot.org/core/> +PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> + +""" + + def sparql_query( sparql_conn: SPARQLWrapper, query: str ) -> Tuple[MonadicDict, ...]: |