From d04779286b49346946120a5801509ba80ee987ba Mon Sep 17 00:00:00 2001
From: Munyoki Kilyungi
Date: Fri, 14 Apr 2023 15:37:31 +0300
Subject: Create new endpoint for fetching GeneRIF entries

* gn3/api/metadata.py: Import Template, sparql_query and RDF_PREFIXES.
(get_genewiki_entries): New endpoint.
* gn3/db/rdf.py: Add new constant for storing rdf prefixes.

Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
---
 gn3/db/rdf.py | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

(limited to 'gn3/db')

diff --git a/gn3/db/rdf.py b/gn3/db/rdf.py
index deecefa..3e8d513 100644
--- a/gn3/db/rdf.py
+++ b/gn3/db/rdf.py
@@ -10,6 +10,21 @@ from pymonad.maybe import Just
 from gn3.monads import MonadicDict
 
 
+RDF_PREFIXES = """PREFIX dct: <http://purl.org/dc/terms/>
+PREFIX foaf: <http://xmlns.com/foaf/0.1/>
+PREFIX generif: <http://www.ncbi.nlm.nih.gov/gene?cmd=Retrieve&dopt=Graphics&list_uids=>
+PREFIX gn: <http://genenetwork.org/>
+PREFIX owl: <http://www.w3.org/2002/07/owl#>
+PREFIX pubmed: <http://rdf.ncbi.nlm.nih.gov/pubmed/>
+PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
+PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX taxon: <http://purl.uniprot.org/taxonomy/>
+PREFIX up: <http://purl.uniprot.org/core/>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
+
+"""
+
+
 def sparql_query(
         sparql_conn: SPARQLWrapper, query: str
 ) -> Tuple[MonadicDict, ...]:
-- 
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