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| author | Frederick Muriuki Muriithi | 2021-09-22 07:53:53 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-09-22 07:57:21 +0300 |
| commit | cd7f301688fd9780df1f842f8bd2b7602775ba1f (patch) | |
| tree | cdbcf8077c532c1b5ba7bc0c934932c1a6eb58ab /gn3/db | |
| parent | 5892ffc7488b0c9cbb4ea08fd5c5f8648e0baea8 (diff) | |
| download | genenetwork3-cd7f301688fd9780df1f842f8bd2b7602775ba1f.tar.gz | |
Fix pylint errors
* Add missing function and module docstrings
* Remove unused imports
* Fix import order
* Rework some code sections to fix issues
* Disable some pylint errors.
Diffstat (limited to 'gn3/db')
| -rw-r--r-- | gn3/db/genotypes.py | 1 | ||||
| -rw-r--r-- | gn3/db/traits.py | 2 |
2 files changed, 2 insertions, 1 deletions
diff --git a/gn3/db/genotypes.py b/gn3/db/genotypes.py index 9d052d9..919c539 100644 --- a/gn3/db/genotypes.py +++ b/gn3/db/genotypes.py @@ -115,6 +115,7 @@ def parse_genotype_marker(line: str, geno_obj: dict, parlist: list): Reworks https://github.com/genenetwork/genenetwork1/blob/master/web/webqtl/utility/gen_geno_ob.py#L143-L190 """ + # pylint: disable=W0702 marker_row = [item.strip() for item in line.split("\t")] geno_table = { geno_obj["mat"]: -1, geno_obj["pat"]: 1, geno_obj["het"]: 0, diff --git a/gn3/db/traits.py b/gn3/db/traits.py index bfe887e..747ed27 100644 --- a/gn3/db/traits.py +++ b/gn3/db/traits.py @@ -46,7 +46,7 @@ def update_sample_data(conn: Any, count: Union[int, str]): """Given the right parameters, update sample-data from the relevant table.""" - # pylint: disable=[R0913, R0914] + # pylint: disable=[R0913, R0914, C0103] STRAIN_ID_SQL: str = "UPDATE Strain SET Name = %s WHERE Id = %s" PUBLISH_DATA_SQL: str = ("UPDATE PublishData SET value = %s " "WHERE StrainId = %s AND Id = %s") |