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| author | Frederick Muriuki Muriithi | 2025-02-28 12:44:55 -0600 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-02-28 12:44:55 -0600 |
| commit | ef1436bca390ee916b7119036ab2d3de8d1344fb (patch) | |
| tree | 8ed0197669d51d2f825080bfbda10e35fa2403aa /gn3/db/sample_data.py | |
| parent | 4edc4450e6fe578212600ad9733f0fa6eb3ffc9f (diff) | |
| download | genenetwork3-ef1436bca390ee916b7119036ab2d3de8d1344fb.tar.gz | |
Fix linting errors.
Diffstat (limited to 'gn3/db/sample_data.py')
| -rw-r--r-- | gn3/db/sample_data.py | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/gn3/db/sample_data.py b/gn3/db/sample_data.py index 8db40e3..415b0b0 100644 --- a/gn3/db/sample_data.py +++ b/gn3/db/sample_data.py @@ -302,8 +302,8 @@ def update_sample_data( if data_type == "mrna": strain_id, data_id, inbredset_id = get_mrna_sample_data_ids( conn=conn, - probeset_id=int(probeset_id), - dataset_name=dataset_name, + probeset_id=int(probeset_id),# pylint: disable=[possibly-used-before-assignment] + dataset_name=dataset_name,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, original_data), ) none_case_attrs = { @@ -315,8 +315,8 @@ def update_sample_data( else: strain_id, data_id, inbredset_id = get_pheno_sample_data_ids( conn=conn, - publishxref_id=int(trait_name), - phenotype_id=phenotype_id, + publishxref_id=int(trait_name),# pylint: disable=[possibly-used-before-assignment] + phenotype_id=phenotype_id,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, original_data), ) none_case_attrs = { @@ -422,8 +422,8 @@ def delete_sample_data( if data_type == "mrna": strain_id, data_id, inbredset_id = get_mrna_sample_data_ids( conn=conn, - probeset_id=int(probeset_id), - dataset_name=dataset_name, + probeset_id=int(probeset_id),# pylint: disable=[possibly-used-before-assignment] + dataset_name=dataset_name,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, data), ) none_case_attrs: Dict[str, Any] = { @@ -435,8 +435,8 @@ def delete_sample_data( else: strain_id, data_id, inbredset_id = get_pheno_sample_data_ids( conn=conn, - publishxref_id=int(trait_name), - phenotype_id=phenotype_id, + publishxref_id=int(trait_name),# pylint: disable=[possibly-used-before-assignment] + phenotype_id=phenotype_id,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, data), ) none_case_attrs = { @@ -528,8 +528,8 @@ def insert_sample_data( if data_type == "mrna": strain_id, data_id, inbredset_id = get_mrna_sample_data_ids( conn=conn, - probeset_id=int(probeset_id), - dataset_name=dataset_name, + probeset_id=int(probeset_id),# pylint: disable=[possibly-used-before-assignment] + dataset_name=dataset_name,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, data), ) none_case_attrs = { @@ -541,8 +541,8 @@ def insert_sample_data( else: strain_id, data_id, inbredset_id = get_pheno_sample_data_ids( conn=conn, - publishxref_id=int(trait_name), - phenotype_id=phenotype_id, + publishxref_id=int(trait_name),# pylint: disable=[possibly-used-before-assignment] + phenotype_id=phenotype_id,# pylint: disable=[possibly-used-before-assignment] strain_name=extract_strain_name(csv_header, data), ) none_case_attrs = { |