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| author | Frederick Muriuki Muriithi | 2022-10-06 17:06:22 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2022-10-06 17:06:22 +0300 |
| commit | f3ac628fd4e9ddb36f48c23186488bcef55f5e48 (patch) | |
| tree | 60950687d413d79714d0f6a78ad8254591ae4d08 /gn3/computations | |
| parent | fe1b8be86b65346724f8f78ab9e5d897e0c480b0 (diff) | |
| download | genenetwork3-f3ac628fd4e9ddb36f48c23186488bcef55f5e48.tar.gz | |
DEBUG: Collect more information on possible failure.
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/rust_correlation.py | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/gn3/computations/rust_correlation.py b/gn3/computations/rust_correlation.py index 03af997..016f00e 100644 --- a/gn3/computations/rust_correlation.py +++ b/gn3/computations/rust_correlation.py @@ -59,7 +59,14 @@ def run_correlation( tmp_dir=tmp_dir, tmp_file=tmp_file, method=method, delimiter=delimiter, x_vals=trait_vals) command_list = [CORRELATION_COMMAND, json_file, TMPDIR] - subprocess.run(command_list, check=True) + try: + subprocess.run(command_list, check=True, capture_output=True) + except subprocess.CalledProcessError as cpe: + actual_command = ( + os.readlink(CORRELATION_COMMAND) + if os.path.islink(CORRELATION_COMMAND) + else CORRELATION_COMMAND) + raise Exception(command_list, actual_command, cpe.stdout, cpe) return parse_correlation_output(output_file, corr_type, top_n) |