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author | Frederick Muriuki Muriithi | 2023-10-26 07:17:38 +0300 |
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committer | Frederick Muriuki Muriithi | 2023-10-26 07:18:19 +0300 |
commit | c1e488035f2d896a2c4a0e20639c44b381aa2081 (patch) | |
tree | 6d30b5e04ef836558dd288e8dc07cfe579cdcd48 /gn3/computations | |
parent | 8c7a9fb61cbcb80edcc7239716b952469bbc6daa (diff) | |
download | genenetwork3-c1e488035f2d896a2c4a0e20639c44b381aa2081.tar.gz |
Fix errors caught by mypy.
Diffstat (limited to 'gn3/computations')
-rw-r--r-- | gn3/computations/gemma.py | 5 |
1 files changed, 3 insertions, 2 deletions
diff --git a/gn3/computations/gemma.py b/gn3/computations/gemma.py index 8036a7b..7f09b0a 100644 --- a/gn3/computations/gemma.py +++ b/gn3/computations/gemma.py @@ -5,6 +5,7 @@ from base64 import b64encode from hashlib import md5 from typing import Dict from typing import List +from typing import Optional from typing import ValuesView from gn3.commands import compose_gemma_cmd from gn3.fs_helpers import get_hash_of_files @@ -53,8 +54,8 @@ def generate_gemma_cmd(gemma_cmd: str, output_dir: str, token: str, gemma_kwargs: Dict, - gemma_wrapper_kwargs: Dict = None, - chromosomes: str = None) -> Dict: + gemma_wrapper_kwargs: Optional[Dict] = None, + chromosomes: Optional[str] = None) -> Dict: """Compute k values""" _hash = get_hash_of_files( [v for k, v in gemma_kwargs.items() if k in ["g", "p", "a", "c"]]) |