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| author | Alexander_Kabui | 2025-02-07 14:24:01 +0300 |
|---|---|---|
| committer | Alexander_Kabui | 2025-02-07 14:24:53 +0300 |
| commit | 6c2c31f83786472b3f9cccd5c3cb2f70ceec4a63 (patch) | |
| tree | 2682f37a3dcdf5b27ae3d4829af10af65e7b1006 /gn3/computations | |
| parent | febd6ebebfba2b585d98c3e5e35c6713c9781036 (diff) | |
| download | genenetwork3-6c2c31f83786472b3f9cccd5c3cb2f70ceec4a63.tar.gz | |
refactor: Add rqtl2 default method and update unittests.
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/rqtl2.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/computations/rqtl2.py b/gn3/computations/rqtl2.py index 206af1c..ae1e475 100644 --- a/gn3/computations/rqtl2.py +++ b/gn3/computations/rqtl2.py @@ -67,7 +67,7 @@ def compose_rqtl2_cmd(rqtl_path, input_file, "directory": workspace_dir, "output_file": output_file, "nperm": data.get("nperm", 0), - "method": data.get("method"), + "method": data.get("method", "HK"), "threshold": data.get("threshold", 1), "cores": config.get('MULTIPROCESSOR_PROCS', 1) } |