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| author | Frederick Muriuki Muriithi | 2021-10-29 08:00:27 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2021-10-29 08:00:27 +0300 |
| commit | 6bfc0e9e9bce5e2505588372ce55ba892db6bda0 (patch) | |
| tree | aa180439da417168217feb7d2c31e9487df408b2 /gn3/computations | |
| parent | 1b5e448ccecdfa146942bbb3d5b22bbbccd492c9 (diff) | |
| download | genenetwork3-6bfc0e9e9bce5e2505588372ce55ba892db6bda0.tar.gz | |
Complete `build_temporary_tissue_correlations_table`
Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi
* gn3/computations/partial_correlations.py: Remove comments after updating
usage of the function at call point
* gn3/db/correlations.py: Complete the implementation of the
`build_temporary_tissue_correlations_table` function
Diffstat (limited to 'gn3/computations')
| -rw-r--r-- | gn3/computations/partial_correlations.py | 13 |
1 files changed, 0 insertions, 13 deletions
diff --git a/gn3/computations/partial_correlations.py b/gn3/computations/partial_correlations.py index d095185..5777a0b 100644 --- a/gn3/computations/partial_correlations.py +++ b/gn3/computations/partial_correlations.py @@ -173,19 +173,6 @@ def correlations_of_all_tissue_traits( `web.webqtl.correlation.correlationFunction.calculateCorrOfAllTissueTrait` function in GeneNetwork1. """ - # The section below existed in the original function, but with the migration - # and the proposed rework (in the near future), the values from the database - # should be passed into this function, rather than have the function fetch - # the data for itself. - # --------------------------------------------------- - # primary_trait_symbol_value_dict = fetch_gene_symbol_tissue_value_dict_for_trait( - # (trait_symbol,), probeset_freeze_id, conn) - # primary_trait_values = primary_trait_symbol_value_dict.vlaues()[0] - # symbol_value_dict = fetch_gene_symbol_tissue_value_dict_for_trait( - # tuple(), probeset_freeze_id, conn) - # --------------------------------------------------- - # We might end up actually getting rid of this function all together as the - # rework is done. primary_trait_values = primary_trait_symbol_value_dict.values()[0] return batch_computed_tissue_correlation( primary_trait_values, symbol_value_dict, method) |